Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs8049890 chr16:8710967 G/A 2.5E-7 500 8.17 17.2 24.05 KM Plot
LGG rs8051505 chr16:8711920 G/T 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs8052173 chr16:8711942 T/C 2.19E-7 502 8.17 17.2 23.98 KM Plot
LGG rs8052189 chr16:8711984 T/C 2.27E-7 501 8.17 17.2 24.03 KM Plot
LGG rs8054034 chr16:67773652 C/A 4.57E-12 508 21.6 31.05 6.47 KM Plot
LGG rs8055693 chr16:8712015 G/T 2.19E-7 502 8.17 17.2 23.98 KM Plot
LGG rs8057028 chr16:8703988 T/C 4.2E-8 498 9.93 19.57 23.82 KM Plot
LGG rs8057713 chr16:8715509 C/T 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs8059132 chr16:8715072 A/C 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs8061384 chr16:67911874 T/G 3.97E-12 509 21.6 30.47 6.47 KM Plot
LGG rs8062874 chr16:8716036 C/T 2.88E-9 509 8.17 18.8 24.03 KM Plot
LGG rs8063843 chr16:8716624 C/T 4.64E-9 500 8.17 18.07 24.05 KM Plot
LGG rs823375 chr7:29650644 T/C 2.12E-5 500 21.7 24.38 8.97 KM Plot
LGG rs823376 chr7:29651401 G/A 2.17E-5 500 21.7 24.93 8.97 KM Plot
LGG rs916739 chr7:20704137 G/A 1.45E-7 487 23.8 21.73 14.37 KM Plot